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f : freesurfer@nmr.mgh.harvard.edu 22 October 2011 • 8:46PM -0400

[Freesurfer] roi analysis from label or annotation
by Knut J Bjuland

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I am working on roi analysis. I have made a label using mri_surdcluster and used mri_label2label to
copy the label from fsaverage to each individual subject. The next step would be to use
mris_anatomical_stats to calculate stats for each subject. I used a Python to merge the txt file from

mris_anatomical_stats.


Is it possible to force mri_surfcluster to save the label another dir than fsaverage?
Can I use convert roi label to annotation and then use aparc2stats
or similar command to get group statics?


Cheers
Knut J


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